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ÌÇÐÄ´«Ã½˜AntisenseÌÇÐÄ´«Ã½™ compounds offer new weapon against influenza A

chart showing connections between sequences
Of 14 antisense oligonucleotide sequences (ASOs) tested against Influenza A virus in a study by University researchers Luis Martinez-Sobrido and Douglas Turner and their collaborators, five were most effective. The five are underlined in this figure showing the ASOs and the secondary structure of the genomic RNA segment they targeted.

Challenging a long-held convention, University researchers have shown they can inhibit the influenza A virus by targeting its genomic RNA with ÌÇÐÄ´«Ã½œantisenseÌÇÐÄ´«Ã½� compounds.

Their findings,, offer scientists a new way to attack an increasingly drug-resistant pathogen that causes an estimated 250,000 to 500,000 deaths a year.

ÌÇÐÄ´«Ã½œAntisenseÌÇÐÄ´«Ã½� compounds are synthesized with nucleotides, the building blocks of nucleic acid, often shown as various combinations of A, U, G and C. When the compounds ÌÇÐÄ´«Ã½“ called antisense oligonucleotides (ASOs) ÌÇÐÄ´«Ã½“ bind to the targeted genomic RNA, they block its ability to replicate.

The collaboration, involving the labs of , professor of chemistry; , associate professor of microbiology and immunology; and two researchers in Poland, reported that ÌÇÐÄ´«Ã½œantisenseÌÇÐÄ´«Ã½� compounds targeting one of the virusÌÇÐÄ´«Ã½™ eight genomic RNA segments caused a five- to 25-fold reduction of influenza A virus in cell cultures.

ÌÇÐÄ´«Ã½œThatÌÇÐÄ´«Ã½™s a big difference,ÌÇÐÄ´«Ã½� Martinez-Sobrido says. ÌÇÐÄ´«Ã½œWhen mice are infected with 10,000 viruses, they all die. However, with 25 times less virus, all animals can survive infection and they donÌÇÐÄ´«Ã½™t even develop symptoms.ÌÇÐÄ´«Ã½�

The most effective of the antisense compounds ranged from 11 to 15 nucleotides long, and were not toxic to host cells.

To date, most ÌÇÐÄ´«Ã½œantisenseÌÇÐÄ´«Ã½� research has focused on targeting messenger RNA; the only two FDA approved ÌÇÐÄ´«Ã½œantisenseÌÇÐÄ´«Ã½� therapeutics ÌÇÐÄ´«Ã½“ vitravene for use against a retina inflammation, and mipomersen to reduce cholesterol ÌÇÐÄ´«Ã½“ do so.

ÌÇÐÄ´«Ã½œTo my knowledge, this is the first published paper where ASOs target internal regions of genomic influenza viral RNA,ÌÇÐÄ´«Ã½� says Turner. ÌÇÐÄ´«Ã½œThis genomic RNA has not been targeted because the dogma was that it is completely encapsulated by the viral nucleoprotein, and therefore is not accessible.ÌÇÐÄ´«Ã½�

But recent evidence has suggested ÌÇÐÄ´«Ã½“ as this study demonstrates ÌÇÐÄ´«Ã½“ that influenza genomic RNA is vulnerable, at least at certain points in the virusÌÇÐÄ´«Ã½™ life cycle. For example, packaging of the influenza viral genome is ÌÇÐÄ´«Ã½œmediated by RNA-RNA interactionsÌÇÐÄ´«Ã½� among all eight segments, Martinez-Sobrido says. ÌÇÐÄ´«Ã½œSo clearly during the replication cycle of influenza virus, the genomic RNA is at least partially naked.ÌÇÐÄ´«Ã½�

Influenza viruses have shown a remarkable ability to mutate and become resistant to current antiviral drugs.

Martinez-Sobrido believes ASOs could be more difficult for viruses to bypass. ÌÇÐÄ´«Ã½œIf an oligonucleotide is targeting a segment of genomic viral RNA that is especially important, any mutation that altered that RNA would likely be lethal to the virus,ÌÇÐÄ´«Ã½� Martinez-Sobrido says. And if additional ASOs could simultaneously attack three or four other segments of genomic viral RNA, the virusÌÇÐÄ´«Ã½™ task would be even more complicated.

The study was supported with funding from an NIH Fogarty International Research Collaboration Award received by Turner and Elzbieta Kierzek, associate professor at the Institute of Bioorganic Chemistry Polish Academy of Sciences. It was also supported by a 2014 University Research Award to Turner and Martinez-Sobrido. The team also included Prof. Ryszard Kierzak of the Polish Academy of Sciences, and University postdoctoral fellows Aitor Nogales in Martinez-SobridoÌÇÐÄ´«Ã½™s lab and Elzbieta Lenartowicz, the lead author, in TurnerÌÇÐÄ´«Ã½™s lab.

For their work in this area, Turner and Ryszard Kierzak have been named recipients of the this year from the American Association for the Advancement of Science (AAAS) and the Foundation for Polish Science.Ìý

Martinez-Sobrido and Turner are both members of the UniversityÌÇÐÄ´«Ã½™s , which draws more than 20 faculty members from seven departments to conduct interdisciplinary research into the function, structure, and processing of RNA. The center is directed by Lynne Maquat, professor of biochemistry and biophysics, who is considered a pioneer of nonsense-mediated mRNA decay.